โก Quick Summary
This study introduces an innovative AI-assisted workflow named the bile acid enzyme announcer unit tool (BEAUT), which successfully predicted over 600,000 candidate bile acid metabolic enzymes. The research led to the identification of novel enzymes, including 3-acetoDCA synthetase (ADS), which produces a previously unreported bile acid skeleton, highlighting the complex interactions between gut microbiota and host physiology.
๐ Key Details
- ๐ Database: Human generalized microbial bile metabolic enzyme (HGBME) database
- ๐ฌ Key Enzymes Identified: Monoacid acylated BA hydrolase (MABH) and 3-acetoDCA synthetase (ADS)
- ๐ Source of ADS: Widely distributed among populations
- โ๏ธ Technology: AI-assisted pipeline for enzyme prediction
๐ Key Takeaways
- ๐งฌ Bile acids (BAs) play a crucial role in host physiology and pathology.
- ๐ค AI technology was utilized to enhance the identification of bile acid metabolic enzymes.
- ๐ Over 600,000 candidate enzymes were predicted and compiled into a comprehensive database.
- ๐ Novel enzymes such as MABH and ADS were characterized for the first time.
- ๐ 3-acetoDCA is a new bile acid skeleton that influences gut microbial interactions.
- ๐ก Insights into the enzymatic relationships between microbial BAs and the host were provided.
- ๐ Published in Cell, 2025.
๐ Background
Bile acids are essential for various physiological processes, including digestion and metabolism. Their modifications can significantly impact both host health and disease states. However, identifying the enzymes responsible for these modifications has been a persistent challenge in microbiome research. The advent of artificial intelligence offers new avenues for overcoming these obstacles, paving the way for more targeted interventions in gut health.
๐๏ธ Study
The study aimed to develop a robust method for identifying gut microbial bile acid metabolic enzymes using an AI-assisted pipeline. The researchers created the BEAUT tool, which predicted a vast array of candidate enzymes, ultimately leading to the establishment of the HGBME database. This comprehensive resource serves as a foundation for future research into bile acid metabolism and its implications for human health.
๐ Results
The AI-assisted workflow successfully predicted over 600,000 candidate bile acid metabolic enzymes. Among these, the identification of 3-acetoDCA synthetase (ADS) was particularly noteworthy, as it produces a novel bile acid skeleton, 3-acetoDCA. This finding not only expands our understanding of bile acid diversity but also highlights the regulatory role of this compound in gut microbial interactions.
๐ Impact and Implications
The implications of this research are profound. By uncovering the enzymatic pathways involved in bile acid metabolism, we can gain deeper insights into the complex relationships between gut microbiota and host physiology. This knowledge could lead to the development of targeted therapies for various gastrointestinal disorders and metabolic diseases, ultimately improving health outcomes for many individuals.
๐ฎ Conclusion
This study exemplifies the transformative potential of AI in microbiome research. The identification of novel bile acid metabolic enzymes opens new avenues for understanding gut health and its impact on overall well-being. As we continue to explore the intricate connections between our microbiota and health, the integration of advanced technologies like AI will be crucial in driving future discoveries.
๐ฌ Your comments
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Identification of gut microbial bile acid metabolic enzymes via an AI-assisted pipeline.
Abstract
The modifications of bile acids (BAs) are fundamental to their role in host physiology and pathology. Identifying their synthetases is crucial for uncovering the diversity of BAs and developing targeted interventions, yet it remains a significant challenge. To address this hurdle, we developed an artificial intelligence (AI)-assisted workflow, bile acid enzyme announcer unit tool (BEAUT), which predicted over 600,000 candidate BA metabolic enzymes that we compiled into the human generalized microbial BA metabolic enzyme (HGBME) database (https://beaut.bjmu.edu.cn). We identified a series of uncharacterized BA enzymes, including monoacid acylated BA hydrolase (MABH) and 3-acetoDCA synthetase (ADS). Notably, ADS can produce an unreported skeleton BA, 3-acetoDCA, with a carbon-carbon bond extension. After determining its bacterial source and catalytic mechanism, we found that 3-acetoDCA is widely distributed among populations and regulates the microbial interactions in the gut. In conclusion, our work offers alternative insights into the relationship between microbial BAs and the host from an enzymatic perspective.
Author: [‘Ding Y’, ‘Luo X’, ‘Guo J’, ‘Xing B’, ‘Lin H’, ‘Ma H’, ‘Wang Y’, ‘Li M’, ‘Ye C’, ‘Yan S’, ‘Lin K’, ‘Zhang J’, ‘Zhuo Y’, ‘Nie Q’, ‘Yang D’, ‘Zhang Z’, ‘Pang Y’, ‘Wang K’, ‘Ma M’, ‘Lai L’, ‘Jiang C’]
Journal: Cell
Citation: Ding Y, et al. Identification of gut microbial bile acid metabolic enzymes via an AI-assisted pipeline. Identification of gut microbial bile acid metabolic enzymes via an AI-assisted pipeline. 2025; (unknown volume):(unknown pages). doi: 10.1016/j.cell.2025.07.017